[ Started: 2023-03-17 22:50:52 CET ]
[ progeny v1.17.3 for BioC-3.17 from https://github.com/saezlab/progeny@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.17"
[3] "/home/omnipath/local/R/4.3"      "/opt/R-devel/lib/R/library"     
Bioconductor version 3.17 (BiocManager 1.30.20), R Under development (unstable)
  (2023-03-16 r83996)
DESeq2 (NA -> 1.39.8) [CRAN]
airway (NA -> 1.19.1) [CRAN]
Skipping 4 packages ahead of CRAN: gtable, commonmark, htmlwidgets, blob
Installing 2 packages: DESeq2, airway
trying URL 'https://bioconductor.org/packages/3.17/bioc/src/contrib/DESeq2_1.39.8.tar.gz'
Content type 'application/x-gzip' length 2131378 bytes (2.0 MB)
==================================================
downloaded 2.0 MB

trying URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/airway_1.19.1.tar.gz'
Content type 'application/x-gzip' length 24755076 bytes (23.6 MB)
==================================================
downloaded 23.6 MB

* installing *source* package ‘DESeq2’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG  -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -c DESeq2.cpp -o DESeq2.o
g++ -std=gnu++17 -I"/opt/R-devel/lib/R/include" -DNDEBUG  -I'/home/omnipath/local/R/4.3-3.17/Rcpp/include' -I'/home/omnipath/local/R/4.3-3.17/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -shared -L/usr/local/lib -o DESeq2.so DESeq2.o RcppExports.o -llapack -L/opt/R-devel/lib/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /home/omnipath/local/R/4.3-3.17/00LOCK-DESeq2/00new/DESeq2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DESeq2)
* installing *source* package ‘airway’ ...
** using staged installation
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (airway)

The downloaded source packages are in
	‘/tmp/RtmpR92gcx/downloaded_packages’
[ Finished: 2023-03-17 22:51:43 CET ]