[ Started: 2023-05-01 01:59:53 CEST ] [ progeny v1.17.3 for BioC-3.17 from https://github.com/saezlab/progeny@master ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.17" [3] "/home/omnipath/local/R/4.3" "/opt/R-devel/lib/R/library" Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Warning: unable to access index for repository https://cran.uni-muenster.de/src/contrib: cannot open URL 'https://cran.uni-muenster.de/src/contrib/PACKAGES' Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 46 packages not available: cpp11, BH, snow, futile.logger, matrixStats, RCurl, httr, curl, filelock, DBI, RSQLite, dplyr, dbplyr, crayon, png, BiocManager, yaml, rmarkdown, knitr, bookdown, RcppArmadillo, Rcpp, ggplot2, locfit, xml2, rappdirs, digest, stringr, progress, XML, withr, tidyselect, tidyr, tibble, rlang, purrr, magrittr, broom, testthat, pheatmap, readxl, readr, Seurat, reshape2, gridExtra, ggrepel [ Finished: 2023-05-01 01:59:58 CEST ]