[ Started: 2024-03-15 13:43:13 CET ] [ progeny v1.17.3 for BioC-3.17 from https://github.com/saezlab/progeny@master ] Loading required package: BiocCheck ─ BiocCheckVersion: 1.36.1 ─ BiocVersion: 3.17 ─ Package: progeny ─ PackageVersion: 1.17.3 ─ sourceDir: /tmp/RtmpdKhshp/file2cf925680016e2/progeny ─ installDir: /tmp/RtmpdKhshp/file2cf925f44d459 ─ BiocCheckDir: /mnt/disk0/build/bioc-check/progeny/bioc-3.17/2024-03-15_1342/progeny/progeny.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * NOTE: 'LazyData:' in the 'DESCRIPTION' should be set to false or removed * Checking version number... * Checking for version number mismatch... * Checking version number validity... * WARNING: y of x.y.z version should be even in release * Checking R version dependency... * NOTE: Update R version dependency from 3.6.0 to 4.3.0. * Checking package size... * ERROR: Package tarball exceeds the Bioconductor size requirement. * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * NOTE: Consider adding these automatically suggested biocViews: SingleCell, Transcriptomics Search 'biocViews' at https://contributions.bioconductor.org * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * NOTE: The Description field in the DESCRIPTION is made up by less than 3 sentences. Please consider expanding this field, and structure it as a full paragraph * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with 'comment=c(ORCID="...")' * Checking License: for restrictive use... * NOTE: License 'Apache License (== 2.0) | file LICENSE' unknown; licenses cannot restrict use * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * WARNING: Import decoupleR in NAMESPACE as well as DESCRIPTION. * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... * NOTE: 'sessionInfo' not found in vignette(s) * Checking package installation calls in R code... * Checking for library/require of progeny... * Checking coding practice... * NOTE: Avoid using '=' for assignment and use '<-' instead * NOTE: Avoid the use of 'paste' in condition signals * WARNING: Avoid T/F variables; If logical, use TRUE/FALSE * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * NOTE: The recommended function length is 50 lines or less. There are 3 functions greater than 50 lines. * Checking man page documentation... * WARNING: Empty or missing \value sections found in man pages. * Checking package NEWS... * Checking unit tests... * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 17 lines (2%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 59 lines (5%) are not. See https://contributions.bioconductor.org/r-code.html See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package name is in support site watched tags. ─ BiocCheck results ── 1 ERRORS | 4 WARNINGS | 13 NOTES See the progeny.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details. [ Finished: 2024-03-15 13:43:26 CET ]