[ Started: 2023-10-23 12:33:54 CEST ]
[ progeny v1.17.3 for BioC-3.18 from https://github.com/saezlab/progeny@master ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 23 packages ahead of CRAN: BiocGenerics, zlibbioc, XVector, GenomeInfoDbData, DelayedArray, S4Arrays, GenomeInfoDb, IRanges, S4Vectors, Biobase, GenomicRanges, MatrixGenerics, Biostrings, KEGGREST, BiocParallel, SummarizedExperiment, BiocFileCache, AnnotationDbi, BiocStyle, DESeq2, SingleCellExperiment, biomaRt, airway
[ Finished: 2023-10-23 12:34:03 CEST ]