[ Started: 2024-05-16 17:22:32 CEST ]
[ progeny v1.17.3 for BioC-3.18 from https://github.com/saezlab/progeny@master (cad6be0 2023-01-30 11:01:10) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.3-3.18"
[3] "/home/omnipath/local/R/4.3"      "/usr/lib/R/library"             
Bioconductor version '3.18' is out-of-date; the current release version '3.19'
  is available with R version '4.4'; see https://bioconductor.org/install
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.18 (BiocManager 1.30.23), R 4.3.3 (2024-02-29)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 25 packages ahead of CRAN: cachem, BiocGenerics, zlibbioc, XVector, GenomeInfoDbData, DelayedArray, S4Arrays, GenomeInfoDb, IRanges, S4Vectors, Biobase, GenomicRanges, MatrixGenerics, Biostrings, KEGGREST, BiocParallel, SummarizedExperiment, BiocFileCache, AnnotationDbi, BiocStyle, DESeq2, SingleCellExperiment, biomaRt, airway, decoupleR
[ Finished: 2024-05-16 17:22:47 CEST ]