[ Started: 2024-04-29 17:35:51 CEST ] [ progeny v1.17.3 for BioC-3.19 from https://github.com/saezlab/progeny@master (cad6be0 2023-01-30 11:01:10) ] [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-alpha/lib/R/library" Warning message: package ‘remotes’ was built under R version 4.5.0 Warning message: package ‘BiocManager’ was built under R version 4.5.0 Bioconductor version 3.19 (BiocManager 1.30.22), R 4.4.0 alpha (2024-04-04 r86334) Bioconductor version 3.19 (BiocManager 1.30.22), R 4.4.0 alpha (2024-04-04 r86334) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 24 packages ahead of CRAN: BiocGenerics, zlibbioc, XVector, GenomeInfoDbData, SparseArray, DelayedArray, S4Arrays, GenomeInfoDb, IRanges, S4Vectors, Biobase, GenomicRanges, MatrixGenerics, Biostrings, KEGGREST, BiocParallel, SummarizedExperiment, BiocFileCache, AnnotationDbi, BiocStyle, DESeq2, SingleCellExperiment, biomaRt, airway [ Finished: 2024-04-29 17:35:57 CEST ]