[ Started: 2024-04-29 17:35:43 CEST ] [ progeny v1.17.3 for BioC-3.19 from https://github.com/saezlab/progeny@master (cad6be0 2023-01-30 11:01:10) ] Hit:1 http://de.archive.ubuntu.com/ubuntu jammy InRelease Hit:2 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease Hit:3 http://de.archive.ubuntu.com/ubuntu jammy-updates InRelease Hit:4 http://de.archive.ubuntu.com/ubuntu jammy-backports InRelease Hit:5 http://security.ubuntu.com/ubuntu jammy-security InRelease Reading package lists... [1] "Libraries: " "/home/omnipath/local/R/4.4-3.19" [3] "/home/omnipath/local/R/4.4" "/opt/R-alpha/lib/R/library" Warning message: package ‘remotes’ was built under R version 4.5.0 Reading package lists... Building dependency tree... Reading state information... libicu-dev is already the newest version (70.1-2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libcurl4-openssl-dev is already the newest version (7.81.0-1ubuntu1.16). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libssl-dev is already the newest version (3.0.2-0ubuntu1.15). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libglpk-dev is already the newest version (5.0-1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libxml2-dev is already the newest version (2.9.13+dfsg-1ubuntu0.4). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... libpng-dev is already the newest version (1.6.37-3build5). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... python3 is already the newest version (3.10.6-1~22.04). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... make is already the newest version (4.3-4.1build1). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu9.2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. Reading package lists... Building dependency tree... Reading state information... pandoc is already the newest version (2.9.2.1-3ubuntu2). The following packages were automatically installed and are no longer required: libclang-10-dev libclang-common-10-dev libclang1-10 libllvm10 libllvm13 libncurses5-dev libobjc-9-dev libstdc++-9-dev Use 'sudo apt autoremove' to remove them. 0 to upgrade, 0 to newly install, 0 to remove and 20 not to upgrade. apt-get install -y libicu-dev apt-get install -y libcurl4-openssl-dev 0 0 apt-get install -y libssl-dev apt-get install -y libglpk-dev 0 0 apt-get install -y libxml2-dev apt-get install -y libpng-dev 0 0 apt-get install -y python3 apt-get install -y make 0 0 apt-get install -y zlib1g-dev apt-get install -y pandoc 0 0 [ Finished: 2024-04-29 17:35:51 CEST ]