[ Started: 2025-07-31 20:26:45 CEST ]
[ progeny v1.17.3 for BioC-3.22 from https://github.com/saezlab/progeny@master (cad6be0 2023-01-30 11:01:10) ]

[1] "Libraries: "                     "/home/omnipath/local/R/4.5-3.22"
[3] "/home/omnipath/local/R/4.5"      "/usr/lib/R/library"             
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Old packages: 'mistyR'
trying URL 'https://bioconductor.org/packages/3.22/bioc/src/contrib/mistyR_1.17.0.tar.gz'
Content type 'application/x-gzip' length 3127302 bytes (3.0 MB)
==================================================
downloaded 3.0 MB

* installing *source* package ‘mistyR’ ...
** this is package ‘mistyR’ version ‘1.17.0’
** package ‘mistyR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mistyR)

The downloaded source packages are in
	‘/tmp/Rtmp3jqGlg/downloaded_packages’
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cloud.r-project.org
Bioconductor version 3.22 (BiocManager 1.30.26), R 4.5.1 (2025-06-13)
Warning message:
package(s) not installed when version(s) same as or greater than current; use
  `force = TRUE` to re-install: 'BiocCheck' 

Skipping 24 packages ahead of CRAN: BiocGenerics, XVector, UCSC.utils, SparseArray, DelayedArray, S4Arrays, GenomeInfoDb, IRanges, S4Vectors, Biobase, GenomicRanges, MatrixGenerics, Biostrings, KEGGREST, BiocParallel, SummarizedExperiment, BiocFileCache, AnnotationDbi, BiocStyle, DESeq2, SingleCellExperiment, biomaRt, airway, decoupleR
[ Finished: 2025-07-31 20:26:56 CEST ]