* checking for file ‘./DESCRIPTION’ ... OK
* preparing ‘wppi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘wppi_workflow.Rmd’ using rmarkdown
[2021-11-04 05:50:10] [INFO]    [wppi] Executing WPPI workflow.
[2021-11-04 05:50:10] [INFO]    [wppi] Collecting database knowledge.
[2021-11-04 05:50:21] [WARN]    [OmnipathR] Failed to download `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` (attempt 1/3); error: Timeout was reached: [ci.monarchinitiative.org] Connection timed out after 10001 milliseconds
[2021-11-04 05:50:32] [WARN]    [OmnipathR] Failed to download `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` (attempt 2/3); error: Timeout was reached: [ci.monarchinitiative.org] Connection timed out after 10001 milliseconds
[2021-11-04 05:50:43] [ERROR]   [OmnipathR] Failed to download `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` (attempt 3/3); error: Timeout was reached: [ci.monarchinitiative.org] Connection timed out after 10000 milliseconds
Quitting from lines 80-102 (wppi_workflow.Rmd) 
Error: processing vignette 'wppi_workflow.Rmd' failed with diagnostics:
Failed to download `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` (attempt 3/3); error: Timeout was reached: [ci.monarchinitiative.org] Connection timed out after 10000 milliseconds
--- failed re-building ‘wppi_workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘wppi_workflow.Rmd’

Error: Vignette re-building failed.
Execution halted