* checking for file ‘./DESCRIPTION’ ... OK * preparing ‘wppi’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘wppi_workflow.Rmd’ using rmarkdown [2021-11-11 05:50:10] [INFO] [wppi] Executing WPPI workflow. [2021-11-11 05:50:10] [INFO] [wppi] Collecting database knowledge. [2021-11-11 05:50:15] [SUCCESS] [OmnipathR] Human Phenotype Ontology (ci.monarchinitiative.org): downloaded 253760 records [2021-11-11 05:50:17] [WARN] [OmnipathR] Failed to download `http://geneontology.org/gene-associations/goa_human.gaf.gz` (attempt 1/3); error: embedded nul in string: '\a\0\0\0\0\0\0\xe5\a' [2021-11-11 05:50:20] [WARN] [OmnipathR] Failed to download `http://geneontology.org/gene-associations/goa_human.gaf.gz` (attempt 2/3); error: Invalid argument [2021-11-11 05:50:23] [ERROR] [OmnipathR] Failed to download `http://geneontology.org/gene-associations/goa_human.gaf.gz` (attempt 3/3); error: Invalid argument Quitting from lines 80-102 (wppi_workflow.Rmd) Error: processing vignette 'wppi_workflow.Rmd' failed with diagnostics: Failed to download `http://geneontology.org/gene-associations/goa_human.gaf.gz` (attempt 3/3); error: Invalid argument --- failed re-building ‘wppi_workflow.Rmd’ SUMMARY: processing the following file failed: ‘wppi_workflow.Rmd’ Error: Vignette re-building failed. Execution halted