* checking for file ‘./DESCRIPTION’ ... OK * preparing ‘wppi’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘wppi_workflow.Rmd’ using rmarkdown [2022-04-12 13:00:10] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2022-04-12 13:00:10] [INFO] [OmnipathR] Welcome to OmnipathR! [2022-04-12 13:00:10] [INFO] [wppi] Executing WPPI workflow. [2022-04-12 13:00:10] [INFO] [wppi] Collecting database knowledge. [2022-04-12 13:00:10] [TRACE] [OmnipathR] Looking up in cache: `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`. [2022-04-12 13:00:10] [INFO] [OmnipathR] Cache record does not exist: `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` [2022-04-12 13:00:10] [TRACE] [OmnipathR] Could not find in cache, initiating download: `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`. [2022-04-12 13:00:10] [INFO] [OmnipathR] Cache item `87889f90d0a864fa4034ee8e0696a05793aa725d` version 1: status changed from `unknown` to `started`. [2022-04-12 13:00:10] [TRACE] [OmnipathR] Exporting object to RDS: `/home/omnipath/.cache/OmnipathR/87889f90d0a864fa4034ee8e0696a05793aa725d-1.rds`. [2022-04-12 13:00:11] [INFO] [OmnipathR] Retrieving URL: `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` [2022-04-12 13:00:11] [TRACE] [OmnipathR] Attempt 1/3: `https://ci.monarchinitiative.org/view/hpo/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt` Quitting from lines 80-102 (wppi_workflow.Rmd) Error: processing vignette 'wppi_workflow.Rmd' failed with diagnostics: HTTP error 404. --- failed re-building ‘wppi_workflow.Rmd’ SUMMARY: processing the following file failed: ‘wppi_workflow.Rmd’ Error: Vignette re-building failed. Execution halted