Loading required package: BiocCheck ─ BiocCheckVersion: 1.31.37 ─ BiocVersion: 3.15 ─ Package: wppi ─ PackageVersion: 1.1.3 ─ sourceDir: /tmp/RtmpCB5bYf/file25851c5f2e3dca/wppi ─ installDir: /tmp/RtmpCB5bYf/file25851ce127a3a ─ BiocCheckDir: /home/omnipath/testing/wppi/bioc-3.15/2022-04-20_1300/wppi/wppi.BiocCheck ─ platform: unix ─ isTarBall: TRUE * Installing package... * Checking package dependencies... [2022-04-20 13:01:57] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2022-04-20 13:01:57] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-04-20 13:01:57] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`. [2022-04-20 13:01:57] [INFO] [OmnipathR] Welcome to OmnipathR! [2022-04-20 13:01:57] [TRACE] [OmnipathR] Cache locked: FALSE * Checking if other packages can import this one... * Checking to see if we understand object initialization... * Checking for deprecated package usage... * Checking for remote package usage... * Checking for 'LazyData: true' usage... * Checking version number... * Checking for version number mismatch... * Checking version number validity... * Checking R version dependency... * NOTE: Update R version dependency from 4.1 to 4.2.0. * Checking package size... * Checking individual file sizes... * Checking biocViews... * Checking that biocViews are present... * Checking package type based on biocViews... Software * Checking for non-trivial biocViews... * Checking that biocViews come from the same category... * Checking biocViews validity... * Checking for recommended biocViews... * Checking build system compatibility... * Checking for blank lines in DESCRIPTION... * Checking if DESCRIPTION is well formatted... * Checking for proper Description: field... * Checking for whitespace in DESCRIPTION field names... * Checking that Package field matches directory/tarball name... * Checking for Version field... * Checking for valid maintainer... * Checking License: for restrictive use... * Checking for pinned package versions... * Checking DESCRIPTION/NAMESPACE consistency... * Checking .Rbuildignore... * Checking for stray BiocCheck output folders... * Checking vignette directory... Warning in png(..., res = dpi, units = "in") : unable to open connection to X11 display '' * Checking package installation calls in R code... * Checking for library/require of wppi... * Checking coding practice... * Checking parsed R code in R directory, examples, vignettes... * Checking function lengths... * NOTE: Recommended function length <= 50 lines.There are 2 functions > 50 lines. * Checking man page documentation... * Checking package NEWS... * Checking unit tests... * NOTE: Consider adding unit tests. We strongly encourage them. See http://bioconductor.org/developers/how-to/unitTesting-guidelines/. * Checking skip_on_bioc() in tests... * Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and vignette source... * NOTE: Consider shorter lines; 2 lines (0%) are > 80 characters long. * NOTE: Consider multiples of 4 spaces for line indents; 50 lines (2%) are not. See http://bioconductor.org/developers/how-to/coding-style/ See styler package: https://cran.r-project.org/package=styler as described in the BiocCheck vignette. * Checking if package already exists in CRAN... * Checking for bioc-devel mailing list subscription... * NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel mailing list (requires admin credentials). Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel * Checking for support site registration... Maintainer is registered at support site. Package name is in support site watched tags. ─ BiocCheck results ── 0 ERRORS | 0 WARNINGS | 6 NOTES See the wppi.BiocCheck folder and run browseVignettes(package = 'BiocCheck') for details.