[ Started: 2022-10-16 21:30:12 CEST ]
[ wppi v1.5.2 for BioC-3.15 from https://github.com/AnaGalhoz37/wppi@main ]
* checking for file ‘./DESCRIPTION’ ... OK
* preparing ‘wppi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘wppi_workflow.Rmd’ using rmarkdown
[2022-10-16 21:30:19] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2022-10-16 21:30:19] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2022-10-16 21:30:19] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2022-10-16 21:30:19] [INFO]    [OmnipathR] Welcome to OmnipathR!
[2022-10-16 21:30:19] [TRACE]   [OmnipathR] Cache locked: FALSE
[2022-10-16 21:30:19] [INFO]    [wppi] Executing WPPI workflow.
[2022-10-16 21:30:19] [INFO]    [wppi] Collecting database knowledge.
[2022-10-16 21:30:19] [TRACE]   [OmnipathR] Looking up in cache: `https://ci.monarchinitiative.org/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`.
[2022-10-16 21:30:19] [INFO]    [OmnipathR] Cache record does not exist: `https://ci.monarchinitiative.org/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`
[2022-10-16 21:30:19] [TRACE]   [OmnipathR] Could not find in cache, initiating download: `https://ci.monarchinitiative.org/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`.
[2022-10-16 21:30:19] [INFO]    [OmnipathR] Cache item `79506c32d59251577fdd7a183eb3eca3cd1ec56b` version 1: status changed from `unknown` to `started`.
[2022-10-16 21:30:19] [TRACE]   [OmnipathR] Exporting object to RDS: `/home/omnipath/.cache/OmnipathR/79506c32d59251577fdd7a183eb3eca3cd1ec56b-1.rds`.
[2022-10-16 21:30:20] [INFO]    [OmnipathR] Retrieving URL: `https://ci.monarchinitiative.org/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`
[2022-10-16 21:30:20] [TRACE]   [OmnipathR] Attempt 1/3: `https://ci.monarchinitiative.org/job/hpo.annotations/lastSuccessfulBuild/artifact/rare-diseases/util/annotation/genes_to_phenotype.txt`
Quitting from lines 80-102 (wppi_workflow.Rmd) 
Error: processing vignette 'wppi_workflow.Rmd' failed with diagnostics:
HTTP error 403.
--- failed re-building ‘wppi_workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘wppi_workflow.Rmd’

Error: Vignette re-building failed.
Execution halted
[ Finished: 2022-10-16 21:30:21 CEST ]