[ Started: 2024-01-04 14:11:44 CET ] [ wppi v1.6.0 for BioC-3.18 from https://github.com/AnaGalhoz37/wppi@main ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.18" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/src/contrib: Line starting ' ...' is malformed! Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/src/contrib: Line starting ' ...' is malformed! 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/src/contrib: Line starting ' ...' is malformed! Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.1 (2023-06-16) Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/src/contrib: Line starting ' ...' is malformed! Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/src/contrib: Line starting ' ...' is malformed! Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' [ Finished: 2024-01-04 14:11:55 CET ]