[ Started: 2024-03-31 14:16:49 CEST ] [ wppi v1.6.0 for BioC-3.18 from https://github.com/AnaGalhoz37/wppi@main (9b574a4 2022-11-02 08:18:02) ] [1] "Libraries: " "/home/omnipath/local/R/4.3-3.18" [3] "/home/omnipath/local/R/4.3" "/usr/lib/R/library" 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29) Old packages: 'progeny' trying URL 'https://bioconductor.org/packages/3.18/bioc/src/contrib/progeny_1.24.0.tar.gz' Content type 'application/x-gzip' length 10605951 bytes (10.1 MB) ================================================== downloaded 10.1 MB * installing *source* package ‘progeny’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progeny) The downloaded source packages are in ‘/tmp/RtmpEYpY6K/downloaded_packages’ 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.3 (2024-02-29) Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'BiocCheck' Skipping 1 packages ahead of CRAN: OmnipathR [ Finished: 2024-03-31 14:17:06 CEST ]