[ Started: 2024-08-23 23:57:23 CEST ]
[ wppi v1.12.0 for BioC-3.19 from https://git.bioconductor.org/packages/wppi@RELEASE_3_19 (1ad2e46 2024-04-30 11:33:03) ]

* installing *source* package ‘wppi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Contains 8 files.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:25] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:27] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Contains 1 files.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:27] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-08-23 23:57:27] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:28] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-08-23 23:57:28] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:28] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-08-23 23:57:28] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:28] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [INFO]    [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Contains 1 files.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Pandoc version: `3.1.3`.
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.19/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-08-23 23:57:29] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)
[ Finished: 2024-08-23 23:57:29 CEST ]