[ Started: 2024-08-21 21:35:53 CEST ] [ wppi v1.6.0 for BioC-3.20 from https://github.com/AnaGalhoz37/wppi@main (9b574a4 2022-11-02 08:18:02) ] * installing *source* package ‘wppi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Contains 8 files. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Pandoc version: `3.1.3`. [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-21 21:35:56] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:56] [TRACE] [OmnipathR] Cache locked: FALSE Note: wrong number of arguments to '/' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Contains 1 files. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Pandoc version: `3.1.3`. [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-21 21:35:58] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:35:58] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [INFO] [OmnipathR] Initialized cache: `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Cache is at `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Contains 1 files. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/omnipath/.cache/OmnipathR`. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Pandoc version: `3.1.3`. [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [TRACE] [OmnipathR] Reading JSON from `/home/omnipath/local/R/4.4-3.20/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-08-21 21:36:01] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-08-21 21:36:01] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (wppi) [ Finished: 2024-08-21 21:36:01 CEST ]